Homework Assignment 1

Lecture

Slides

Slides (HTML)

Slides (PDF)

Literature References

Sequence Databases

Structure Databases

Web Resources

Sequence Databases

UniProt at EXPASY (Includes SwissProt and TREMBL)

Expasy Tools

HAMAP - High quality automatic and manual annotation of micrbial Proteomes

NCBI Protein Database

NCBI Blast (includes BLASTP, BLASTX, TBLASTN, TBLASTX, PSI-BLAST)

Protein Identification Resource (includes UniProt, PIRSF, iProCLass and iPRoLink)

EBI Protein Databases

EBI Uniprot Knowledgebase

EBI Human Proteomics Initiative

EBI International Protein Index

UCSC Proteome Browser

Proteome Web

Structure Databases

CATH

SCOP

DisProt

TOPS Topology of Protein Structure

ProDom

Gene3D

NCBI MMDB Molecular Modeling Database at NCBI

ModBase

RCSB PDB Protein Databank

WW PDB World-Wide Protein Databank

PDBj Protein Databank of Japan

BMRB Biological Magnetic Resonance Data Bank

EBI MSD Molecular Structure Database group at EBI

Superfamily

SwissModel

Structure Visualization Tools

NCBI CN3D

PyMol

Jmol

KiNG Display Software

RasMol (Old! Based on original Roger Sayer's program)

Swiss-PdbViewer

Astex Viewer

MolMol

VMD

YASARA